STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_11173.1Pre-mrna-processing factor 19. (506 aa)    
Predicted Functional Partners:
LCOR_02263.1
Pre-mrna-splicing factor syf1.
   
 0.999
LCOR_03613.1
Cwf15 cwc15 cell cycle control family protein.
    
 0.999
LCOR_02729.1
Pre-mrna splicing factor prp46.
   
0.999
LCOR_03897.1
Pre-mrna-splicing factor isy1 homolog.
    
 0.999
LCOR_04931.1
Breast carcinoma amplified sequence 2.
   
 0.999
LCOR_09186.1
Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome.
    
 0.999
LCOR_00524.1
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 
 0.994
LCOR_03951.1
Cwc27_rhio9 ame: full peptidyl-prolyl isomerasecwc27 short ppiase cwc27 ame: full rotamase cwc27.
    
 0.994
LCOR_05842.1
Duf1716-domain-containing protein.
   
 0.994
LCOR_03854.1
Pre-mrna-processing-splicing factor 8.
   
 
 0.993
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.