STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubiBPutative protein kinase UbiB. (591 aa)    
Predicted Functional Partners:
yqjI_1
Transcriptional regulator YqjI.
 
     0.854
prmC_2
Release factor glutamine methyltransferase.
   
 
 0.516
ubiG
Ubiquinone biosynthesis O-methyltransferase.
   
 
 0.516
KJQ54473.1
Putative S-adenosylmethionine-dependent methyltransferase.
   
 
 0.516
map_1
Methionine aminopeptidase 1; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
       0.501
KJQ53597.1
Polyketide cyclase / dehydrase and lipid transport.
    
 
 0.488
hemB
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
    
 0.475
hemA
Glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
     
 0.430
KJQ53677.1
O-Antigen ligase.
  
 
 0.429
pcpB_1
Pentachlorophenol 4-monooxygenase.
   
 
 0.424
Your Current Organism:
Microbacterium sp. SA39
NCBI taxonomy Id: 1263625
Other names: M. sp. SA39
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