STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000755245_02443Unannotated protein. (415 aa)    
Predicted Functional Partners:
GCA_000755245_01303
Unannotated protein.
   
  
 0.858
GCA_000755245_01304
Unannotated protein.
   
  
 0.855
GCA_000755245_00915
Unannotated protein.
  
 0.837
GCA_000755245_02441
Unannotated protein.
       0.745
GCA_000755245_00213
Unannotated protein.
     
 0.679
GCA_000755245_02517
Unannotated protein.
   
  
 0.678
GCA_000755245_00237
Unannotated protein.
    
  0.670
GCA_000755245_03237
Unannotated protein.
     
 0.646
GCA_000755245_02442
Unannotated protein.
  
  
 0.615
GCA_000755245_02049
Unannotated protein.
   
 
 0.601
Your Current Organism:
Halococcus sediminicola
NCBI taxonomy Id: 1264579
Other names: CECT 8275, H. sediminicola, Halococcus sediminicola Yim et al. 2014, Halococcus sp. CBA1101, JCM 18965, strain CBA1101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.