STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW51426.1Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains. (373 aa)    
Predicted Functional Partners:
SFW51403.1
[FeFe] hydrogenase H-cluster maturation GTPase HydF.
       0.773
SFW51413.1
Protein of unknown function.
       0.773
SFW51436.1
mRNA interferase MazF; Toxic component of a type II toxin-antitoxin (TA) system.
       0.515
SFW51390.1
Malate dehydrogenase (oxaloacetate-decarboxylating).
       0.501
SFW23458.1
Capsular exopolysaccharide family.
  
  
 0.452
SFW11094.1
Beta-glucosidase.
  
     0.403
Your Current Organism:
Ruminococcus flavefaciens
NCBI taxonomy Id: 1265
Other names: ATCC 19208, R. flavefaciens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.