STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW15125.1Lysophospholipase L1. (361 aa)    
Predicted Functional Partners:
SFW40724.1
Glycosyl hydrolase family 48.
  
  0.867
SFW32729.1
Carbohydrate binding module (family 6).
 
  
 0.851
SFW20129.1
Carbohydrate binding domain-containing protein.
  
  0.820
SFW54453.1
Carbohydrate binding domain-containing protein.
  
  0.817
SFW10896.1
Rhamnogalacturonan endolyase.
  
  0.786
SFW23806.1
Glycosyl hydrolases family 11.
  
     0.772
SFW45436.1
Glycosyl hydrolases family 11; Partial gene; manually curated.
  
     0.771
xynA
Glycosyl hydrolases family 11; Xylanase domain releases more xylo-oligosaccharides and GH10 domain more xylose; In the C-terminal section; belongs to the glycosyl hydrolase 10 (cellulase F) family.
  
     0.771
SFW23957.1
Carbohydrate binding domain-containing protein; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.770
SFW11056.1
Beta-xylosidase.
  
     0.764
Your Current Organism:
Ruminococcus flavefaciens
NCBI taxonomy Id: 1265
Other names: ATCC 19208, R. flavefaciens
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