STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW16089.1MoxR-like ATPase. (317 aa)    
Predicted Functional Partners:
SFW16114.1
Transglutaminase-like superfamily protein.
 
  
 0.951
SFW16100.1
Protein of unknown function DUF58.
 
  
 0.911
SFW33312.1
Transglutaminase-like superfamily protein.
 
   
 0.779
SFW16127.1
Uncharacterized membrane protein HdeD, DUF308 family.
       0.762
SFW19853.1
Arginine/lysine/ornithine decarboxylase.
   
   0.556
SFW41331.1
Arginine/lysine/ornithine decarboxylase.
   
   0.556
SFW51390.1
Malate dehydrogenase (oxaloacetate-decarboxylating).
  
    0.443
SFW16142.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.408
SFW33305.1
Protein of unknown function DUF58.
 
  
 0.407
Your Current Organism:
Ruminococcus flavefaciens
NCBI taxonomy Id: 1265
Other names: ATCC 19208, R. flavefaciens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.