STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW19993.1Carboxynorspermidine decarboxylase. (379 aa)    
Predicted Functional Partners:
SFW19945.1
Saccharopine dehydrogenase (NAD+, L-lysine forming).
 
 
 0.977
SFW39576.1
Hypothetical protein.
    
  0.955
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.
  
 0.950
SFW19895.1
Agmatinase; Belongs to the arginase family.
  
 
 0.795
SFW19976.1
Peptidyl-prolyl cis-trans isomerase B (cyclophilin B).
       0.778
SFW19961.1
VanZ like family protein; Manually curated.
       0.773
SFW20005.1
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase.
       0.773
SFW19934.1
Ribosomal protein S18 acetylase RimI.
   
  0.764
SFW20816.1
Protein N-acetyltransferase, RimJ/RimL family.
   
  0.714
SFW27438.1
Protein N-acetyltransferase, RimJ/RimL family.
   
  0.714
Your Current Organism:
Ruminococcus flavefaciens
NCBI taxonomy Id: 1265
Other names: ATCC 19208, R. flavefaciens
Server load: low (28%) [HD]