STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW20230.1Six-cysteine peptide SCIFF. (45 aa)    
Predicted Functional Partners:
SFW20246.1
Uncharacterized protein.
 
 
 
 0.990
SFW23415.1
Radical SAM additional 4Fe4S-binding SPASM domain-containing protein.
 
 
 
 0.958
SFW24812.1
Radical SAM additional 4Fe4S-binding SPASM domain-containing protein.
 
 
 
 0.911
SFW20223.1
Hypothetical protein.
       0.507
SFW20205.1
ATP-binding cassette, subfamily F, member 3.
       0.485
SFW20260.1
Helix-turn-helix domain-containing protein.
       0.429
Your Current Organism:
Ruminococcus flavefaciens
NCBI taxonomy Id: 1265
Other names: ATCC 19208, R. flavefaciens
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