STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW24530.1Uncharacterized protein. (168 aa)    
Predicted Functional Partners:
SFW15947.1
Uncharacterized membrane protein.
     0.927
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.826
SFW24513.1
O-acetylhomoserine (thiol)-lyase.
       0.701
SFW36824.1
Uncharacterized membrane protein YfhO.
  
     0.666
SFW43050.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
 
 
  0.581
SFW24489.1
Protoporphyrinogen IX oxidase, menaquinone-dependent (flavodoxin domain).
       0.516
SFW29526.1
Uncharacterized membrane protein YfhO.
  
     0.488
SFW20535.1
tRNA nucleotidyltransferase (CCA-adding enzyme).
    
 0.430
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
    
  0.428
SFW30691.1
Putative ABC-transporter type IV.
 
     0.412
Your Current Organism:
Ruminococcus flavefaciens
NCBI taxonomy Id: 1265
Other names: ATCC 19208, R. flavefaciens
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