Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFW29797.1Multiple sugar transport system permease protein. (295 aa)    
Predicted Functional Partners:
SFW29806.1
Multiple sugar transport system permease protein.
  0.981
SFW52691.1
Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.973
SFW53398.1
Multiple sugar transport system permease protein.
  0.932
SFW51929.1
Raffinose/stachyose/melibiose transport system permease protein.
  0.916
SFW29966.1
ABC-type glycerol-3-phosphate transport system, permease component.
  0.913
SFW11118.1
Multiple sugar transport system permease protein.
  0.911
SFW12793.1
Multiple sugar transport system permease protein.
  0.911
SFW12553.1
Oligogalacturonide transport system permease protein.
 
  0.910
SFW30024.1
Multiple sugar transport system permease protein.
 
  0.910
SFW29815.1
Multidrug efflux pump subunit AcrA (membrane-fusion protein).
 
     0.878
Your Current Organism:
Ruminococcus flavefaciens
NCBI taxonomy Id: 1265
Other names: ATCC 19208, R. flavefaciens
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