STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW34120.1D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family. (471 aa)    
Predicted Functional Partners:
SFW34228.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6).
 
  
 
0.832
SFW12165.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6).
  
  
 
0.824
SFW20604.1
Penicillin-binding protein 1A.
   
 
 0.780
SFW43137.1
Stage V sporulation protein D (sporulation-specific penicillin-binding protein).
  
 
 0.774
SFW50053.1
PASTA domain-containing protein.
  
 
 0.487
SFW34103.1
Calcineurin-like phosphoesterase superfamily protein.
       0.463
Your Current Organism:
Ruminococcus flavefaciens
NCBI taxonomy Id: 1265
Other names: ATCC 19208, R. flavefaciens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.