STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW39827.1Cna protein B-type domain-containing protein; Partial gene; manually curated. (1615 aa)    
Predicted Functional Partners:
SFW19263.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
    0.934
SFW45549.1
Sortase family protein.
 
  
 0.551
SFW46096.1
Sortase A.
 
  
 0.527
SFW22432.1
WYL domain-containing protein.
  
     0.456
SFW21360.1
PD-(D/E)XK nuclease superfamily protein.
  
     0.426
SFW51728.1
Transcriptional regulator, TetR family.
  
     0.418
SFW22418.1
WYL domain-containing protein.
  
     0.414
Your Current Organism:
Ruminococcus flavefaciens
NCBI taxonomy Id: 1265
Other names: ATCC 19208, R. flavefaciens
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