STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW42318.1Prepilin-type N-terminal cleavage/methylation domain-containing protein; Manually curated. (194 aa)    
Predicted Functional Partners:
SFW30985.1
Type IV pilus assembly protein PilB.
 
 0.897
SFW30911.1
Type IV pilus assembly protein PilC.
 
  
 0.860
SFW30975.1
Leader peptidase (prepilin peptidase) / N-methyltransferase.
 
  
 0.821
SFW13171.1
ComEC/Rec2-related protein.
 
  
 0.670
SFW31011.1
Type IV pilus assembly protein PilA.
 
 
0.610
SFW30997.1
Twitching motility protein PilT.
 
   
 0.583
SFW30923.1
Type IV pilus assembly protein PilM.
 
  
 0.559
SFW12261.1
Helix-hairpin-helix motif-containing protein.
 
  
 0.517
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.
       0.498
SFW11573.1
DNA processing protein.
  
  
 0.454
Your Current Organism:
Ruminococcus flavefaciens
NCBI taxonomy Id: 1265
Other names: ATCC 19208, R. flavefaciens
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