STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KGE03450.1tRNA 5-methylaminomethyl-2-thiouridine synthase TusA; Belongs to the sulfur carrier protein TusA family. (58 aa)    
Predicted Functional Partners:
KGE04994.1
Cysteine desulfurase, IscS subfamily.
   
 0.988
KGE03602.1
Hypothetical protein.
 
 
 0.972
KGE03962.1
Hypothetical protein.
  
 
 0.930
KGE04761.1
Molybdopterin biosynthesis MoeB protein; Belongs to the sulfur carrier protein TusA family.
  
  
  0.894
KGE03451.1
Putative transporting ATPase.
 
     0.848
pdxB
Erythronate-4-phosphate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate.
 
     0.834
KGE05149.1
Putative cytoplasmic protein.
  
     0.736
KGE03449.1
Hypothetical protein.
 
     0.718
KGE03361.1
Putative exported protein; YPO3233.
  
     0.689
KGE05102.1
Serine-protein kinase RsbW.
  
     0.671
Your Current Organism:
Pseudohaliea rubra
NCBI taxonomy Id: 1265313
Other names: Haliea rubra CM41_15a, Haliea rubra DSM 19751, P. rubra DSM 19751, Pseudohaliea rubra DSM 19751
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.