STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000378625_03024Unannotated protein. (227 aa)    
Predicted Functional Partners:
GCA_000378625_03025
Unannotated protein.
       0.730
GCA_000378625_01727
Unannotated protein.
 
 
 0.712
GCA_000378625_01732
Unannotated protein.
 
  
 0.702
GCA_000378625_01726
Unannotated protein.
 
  
 0.700
GCA_000378625_01729
Unannotated protein.
    
 0.525
GCA_000378625_01730
Unannotated protein.
 
  
 0.482
GCA_000378625_00893
Unannotated protein.
 
   
 0.467
GCA_000378625_03042
Unannotated protein.
 
   
 0.452
GCA_000378625_00892
Unannotated protein.
 
   
 0.436
GCA_000378625_03027
Unannotated protein.
 
     0.417
Your Current Organism:
Colwellia piezophila
NCBI taxonomy Id: 1265503
Other names: C. piezophila ATCC BAA-637, Colwellia piezophila ATCC BAA-637
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