STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EUJ44352.1Hypothetical protein. (128 aa)    
Predicted Functional Partners:
rimM
16S rRNA-processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
  
    0.854
trmD
tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
  
    0.833
EUJ44355.1
Hypothetical protein.
       0.770
EUJ52360.1
Heptaprenyl diphosphate synthase component I.
  
    0.740
EUJ49197.1
COG2340 Uncharacterized protein with SCP/PR1 domains.
  
     0.689
EUJ43066.1
COG4837 Uncharacterized protein conserved in bacteria.
  
     0.688
EUJ51178.1
Putative comG operon protein ComGD; COG2165 Type II secretory pathway, pseudopilin PulG.
  
     0.685
EUJ44012.1
Hypothetical protein.
  
     0.680
EUJ51612.1
Hypothetical protein.
  
     0.650
EUJ44920.1
COG3611 Replication initiation/membrane attachment protein; overlaps another CDS with the same product name.
  
     0.647
Your Current Organism:
Listeria rocourtiae
NCBI taxonomy Id: 1265846
Other names: L. rocourtiae FSL F6-920, Listeria rocourtiae CIP 109804, Listeria rocourtiae FSL F6-920
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.