STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EUJ40180.1Autolysin, amidase; COG5632 N-acetylmuramoyl-L-alanine amidase. (450 aa)    
Predicted Functional Partners:
EUJ40179.1
Putative autolysin (amidase).
      
0.776
EUJ40181.1
Hypothetical protein.
       0.547
EUJ38729.1
NprE; Extracellular zinc metalloprotease.
   
  
 0.502
EUJ40157.1
YbtB protein; COG3428 Predicted membrane protein; overlaps another CDS with the same product name.
  
     0.421
EUJ40486.1
Two-component sensor histidine kinase YclK; COG0642 Signal transduction histidine kinase.
  
     0.420
EUJ41767.1
COG0584 Glycerophosphoryl diester phosphodiesterase.
  
     0.411
Your Current Organism:
Brochothrix campestris
NCBI taxonomy Id: 1265861
Other names: B. campestris FSL F6-1037, Brochothrix campestris ATCC 43754, Brochothrix campestris FSL F6-1037
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