STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCQ89151.1Putative Transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (97 aa)    
Predicted Functional Partners:
ygiD
Putative enzyme; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
 0.519
CCQ90456.1
Putative Acyl-CoA dehydrogenase, short-chain specific; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 
 0.515
CCQ89148.1
Conserved hypothetical protein, UPF0753, contains DUF2309; Homologs of previously reported genes of unknown function; Belongs to the UPF0753 family.
 
     0.507
CCQ89150.1
Putative NADH-quinone oxidoreductase, subunit L; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.482
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
     
 0.482
fba
Similar to fructose-biphosphate aldolase.
     
 0.479
CCQ91477.1
Putative Octaheam cytochrome c; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
   
 
  0.471
ribE
Riboflavin synthase alpha chain.
   
 
  0.469
CCQ91762.1
Putative NADPH-dependent FMN reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
  0.466
aldHT
Aldehyde dehydrogenase, thermostable.
     
 0.464
Your Current Organism:
Nitrospina gracilis
NCBI taxonomy Id: 1266370
Other names: N. gracilis 3/211, Nitrospina gracilis 3/211, Nitrospina gracilis str. 3/211, Nitrospina gracilis strain 3/211
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.