STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCQ90020.1Putative Tetratricopeptide TPR_2 repeat protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (264 aa)    
Predicted Functional Partners:
CCQ89867.1
Exported hypothetical protein; No homology to any previously reported sequences.
 
  
  0.913
CCQ90543.1
Hypothetical protein; No homology to any previously reported sequences.
 
  
  0.913
CCQ91643.1
Hypothetical protein; No homology to any previously reported sequences.
 
  
  0.913
CCQ89214.1
Hypothetical protein; No homology to any previously reported sequences.
 
  
  0.863
CCQ89210.1
Hypothetical protein; No homology to any previously reported sequences.
 
  
  0.861
CCQ90021.1
Hypothetical protein; No homology to any previously reported sequences.
  
    0.790
CCQ89508.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.783
CCQ92187.1
Exported hypothetical protein, contains TPR repeats; No homology to any previously reported sequences.
 
     0.774
pilT
Twitching mobility protein PilT; Function of homologous gene experimentally demonstrated in an other organism; structure.
       0.773
CCQ89974.1
Hypothetical protein, contains TPR repeats; No homology to any previously reported sequences.
 
     0.773
Your Current Organism:
Nitrospina gracilis
NCBI taxonomy Id: 1266370
Other names: N. gracilis 3/211, Nitrospina gracilis 3/211, Nitrospina gracilis str. 3/211, Nitrospina gracilis strain 3/211
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.