STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCQ89970.1Conserved membrane hypothetical protein, DedA family; Homologs of previously reported genes of unknown function. (249 aa)    
Predicted Functional Partners:
CCQ89992.1
Putative Mercuric reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     0.975
lpdA
Dihydrolipoyl dehydrogenase; Function of strongly homologous gene; enzyme.
      0.900
CCQ89996.1
Putative Dihydrolipoyl dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
      0.900
lpd
Dihydrolipoyl dehydrogenase; Function of strongly homologous gene; enzyme.
      0.900
CCQ89387.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
     0.833
CCQ90051.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.735
CCQ89423.1
Fatty acid hydroxylase.
 
     0.725
CCQ91064.1
Glycosyl transferase, family 2; Function of strongly homologous gene; enzyme.
  
     0.702
CCQ92032.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.697
CCQ91430.1
AMP-dependent synthetase and ligase.
    
 0.618
Your Current Organism:
Nitrospina gracilis
NCBI taxonomy Id: 1266370
Other names: N. gracilis 3/211, Nitrospina gracilis 3/211, Nitrospina gracilis str. 3/211, Nitrospina gracilis strain 3/211
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.