STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCQ90390.1Hypothetical protein; No homology to any previously reported sequences. (78 aa)    
Predicted Functional Partners:
CCQ90389.1
Hypothetical protein; No homology to any previously reported sequences.
       0.773
CCQ90392.1
Integrase family protein; Belongs to the 'phage' integrase family.
 
   
 0.743
gltB
Fragment of Glutamate synthase, alpha subunit (part 2); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
  0.651
mdh
Putative Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate.
     
 0.606
acnA
Aconitate hydratase; Function of strongly homologous gene; enzyme.
     
 0.579
acsA
Acetoacetyl-coenzyme A synthetase; Function of strongly homologous gene; enzyme.
  
  
  0.541
porA
Pyruvate:ferredoxin oxidoreductase, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.536
forA
2-oxoglutarate:ferredoxin oxidoredutase, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.536
CCQ90391.1
Hypothetical protein; No homology to any previously reported sequences.
       0.529
CCQ90434.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
   
    0.517
Your Current Organism:
Nitrospina gracilis
NCBI taxonomy Id: 1266370
Other names: N. gracilis 3/211, Nitrospina gracilis 3/211, Nitrospina gracilis str. 3/211, Nitrospina gracilis strain 3/211
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.