STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCQ90507.1Methyltransferase type 11. (208 aa)    
Predicted Functional Partners:
CCQ90506.1
Putative Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.661
CCQ91484.1
Hypothetical protein; No homology to any previously reported sequences.
  
 0.627
CCQ89547.1
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 0.595
CCQ91430.1
AMP-dependent synthetase and ligase.
    
 0.590
serB
Phosphoserine phosphatase.
   
  0.525
CCQ91029.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
  
    0.516
nuoF
NADH:ubiquinone oxidoreductase, subunit F; Function of strongly homologous gene; enzyme.
    
  0.467
CCQ90505.1
Exported hypothetical protein; No homology to any previously reported sequences.
       0.456
CCQ89752.1
Putative Ubiquinone/menaquinone biosynthesis methyltransferase UbiE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.425
Your Current Organism:
Nitrospina gracilis
NCBI taxonomy Id: 1266370
Other names: N. gracilis 3/211, Nitrospina gracilis 3/211, Nitrospina gracilis str. 3/211, Nitrospina gracilis strain 3/211
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.