STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCQ90526.1Conserved hypothetical protein, Transglutaminase domain protein; Homologs of previously reported genes of unknown function. (295 aa)    
Predicted Functional Partners:
CCQ90528.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
 0.961
CCQ90527.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
    0.932
CCQ90529.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
    0.929
CCQ90525.1
Hypothetical protein; No homology to any previously reported sequences.
       0.773
uvrA
UvrABC system protein A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
    
  0.497
CCQ90523.1
Response regulator with a HTH DNA-binding domain.
       0.492
CCQ90524.1
Hypothetical protein; No homology to any previously reported sequences.
       0.492
Your Current Organism:
Nitrospina gracilis
NCBI taxonomy Id: 1266370
Other names: N. gracilis 3/211, Nitrospina gracilis 3/211, Nitrospina gracilis str. 3/211, Nitrospina gracilis strain 3/211
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.