STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCQ90947.1Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function. (123 aa)    
Predicted Functional Partners:
CCQ90349.1
Heptaprenyl diphosphate synthase component I.
 
    0.966
CCQ90946.1
Exported hypothetical protein; No homology to any previously reported sequences.
       0.747
CCQ91108.1
Putative Polyprenyl-diphosphate synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the FPP/GGPP synthase family.
  
 
  0.549
crtE
Geranylgeranyl pyrophosphate synthase homolog; Belongs to the FPP/GGPP synthase family.
  
 
  0.549
recG
ATP-dependent DNA helicase recG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
       0.545
CCQ91157.1
Exported hypothetical protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
     0.527
CCQ90945.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.500
Your Current Organism:
Nitrospina gracilis
NCBI taxonomy Id: 1266370
Other names: N. gracilis 3/211, Nitrospina gracilis 3/211, Nitrospina gracilis str. 3/211, Nitrospina gracilis strain 3/211
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.