Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CCQ90968.1 | CCQ90969.1 | NITGR_520010 | NITGR_520011 | Conserved exported hypothetical protein, cytochrome c554-like; Homologs of previously reported genes of unknown function. | Putative PHP domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | 0.515 |
| CCQ90969.1 | CCQ90968.1 | NITGR_520011 | NITGR_520010 | Putative PHP domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Conserved exported hypothetical protein, cytochrome c554-like; Homologs of previously reported genes of unknown function. | 0.515 |
| CCQ90969.1 | nusB | NITGR_520011 | NITGR_910037 | Putative PHP domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.597 |
| CCQ90969.1 | rbfA | NITGR_520011 | NITGR_950032 | Putative PHP domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.469 |
| CCQ90969.1 | rnc | NITGR_520011 | NITGR_740019 | Putative PHP domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.888 |
| CCQ90969.1 | tpiA | NITGR_520011 | NITGR_700030 | Putative PHP domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. | 0.490 |
| nusB | CCQ90969.1 | NITGR_910037 | NITGR_520011 | Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | Putative PHP domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | 0.597 |
| nusB | rnc | NITGR_910037 | NITGR_740019 | Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.601 |
| rbfA | CCQ90969.1 | NITGR_950032 | NITGR_520011 | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | Putative PHP domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | 0.469 |
| rnc | CCQ90969.1 | NITGR_740019 | NITGR_520011 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Putative PHP domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | 0.888 |
| rnc | nusB | NITGR_740019 | NITGR_910037 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.601 |
| tpiA | CCQ90969.1 | NITGR_700030 | NITGR_520011 | Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. | Putative PHP domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | 0.490 |