STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCQ90984.1Conserved hypothetical protein, contains DUF164; Homologs of previously reported genes of unknown function. (247 aa)    
Predicted Functional Partners:
rnhA
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase H family.
  
  
 0.750
CCQ89922.1
Putative Signal transduction response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
 
  0.642
CCQ91202.1
Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
  0.606
CCQ89467.1
Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 
  0.584
CCQ92053.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.582
CCQ89716.1
Hypothetical protein; No homology to any previously reported sequences.
   
 
  0.550
CCQ90882.1
Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
  0.525
CCQ89173.1
Putative Diguanylate phosphodiesterase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
   
 
  0.518
NITGR_270008
Oligopeptide transporter, OPT superfamily (fragment).
   
 
  0.518
CCQ89644.1
Putative PAS domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
 
  0.504
Your Current Organism:
Nitrospina gracilis
NCBI taxonomy Id: 1266370
Other names: N. gracilis 3/211, Nitrospina gracilis 3/211, Nitrospina gracilis str. 3/211, Nitrospina gracilis strain 3/211
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.