STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptBLipopolysaccharide export system, ATP-binding protein LptB; Function of strongly homologous gene; transporter. (240 aa)    
Predicted Functional Partners:
CCQ90467.1
Putative Permease, YjgP/YjgQ family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.996
CCQ91383.1
Putative Permease, YjgP/YjgQ family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.996
CCQ91405.1
Conserved exported hypothetical protein, OstA-like; Homologs of previously reported genes of unknown function.
  
  
 0.986
CCQ91406.1
Exported hypothetical protein, LptC-related; No homology to any previously reported sequences.
    
  0.979
rpoN
RNA polymerase, sigma-54 factor (sigma N); Function of homologous gene experimentally demonstrated in an other organism; factor.
 
  
 0.808
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
      0.795
lpxA
Acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
  
 0.764
CCQ91226.1
Putative Organic solvent tolerance protein osta; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.739
CCQ90908.1
MotA/TolQ/ExbB proton channel (modular protein).
  
     0.738
CCQ89640.1
Putative Biopolymer transport protein ExbB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.737
Your Current Organism:
Nitrospina gracilis
NCBI taxonomy Id: 1266370
Other names: N. gracilis 3/211, Nitrospina gracilis 3/211, Nitrospina gracilis str. 3/211, Nitrospina gracilis strain 3/211
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.