STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCQ91406.1Exported hypothetical protein, LptC-related; No homology to any previously reported sequences. (146 aa)    
Predicted Functional Partners:
lptB
Lipopolysaccharide export system, ATP-binding protein LptB; Function of strongly homologous gene; transporter.
    
  0.979
CCQ91405.1
Conserved exported hypothetical protein, OstA-like; Homologs of previously reported genes of unknown function.
     
 0.816
rpoN
RNA polymerase, sigma-54 factor (sigma N); Function of homologous gene experimentally demonstrated in an other organism; factor.
       0.746
yjeE
UPF0079 ATP-binding protein yjeE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.586
CCQ91408.1
Putative bifunctional NAD(P)H-hydrate repair enzyme Nnr (fragment, part 2); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.586
CCQ91402.1
Putative Ribosome-associated sigma 54 modulation protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
       0.563
ptsN
PTS IIA-like Nitrogen regulatory protein; Function of strongly homologous gene; enzyme.
       0.499
Your Current Organism:
Nitrospina gracilis
NCBI taxonomy Id: 1266370
Other names: N. gracilis 3/211, Nitrospina gracilis 3/211, Nitrospina gracilis str. 3/211, Nitrospina gracilis strain 3/211
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