STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCQ91730.1Putative helix-turn-helix motif protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (144 aa)    
Predicted Functional Partners:
CCQ92000.1
CinA-like protein; Belongs to the CinA family.
    
 0.684
CCQ89867.1
Exported hypothetical protein; No homology to any previously reported sequences.
     
 0.599
CCQ90543.1
Hypothetical protein; No homology to any previously reported sequences.
     
 0.599
CCQ91643.1
Hypothetical protein; No homology to any previously reported sequences.
     
 0.599
nadE
NAD(+) synthase (glutamine-hydrolyzing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.574
CCQ91732.1
Hypothetical protein; No homology to any previously reported sequences.
    
  0.551
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.490
CCQ91335.1
Silent information regulator protein Sir2.
   
 
  0.473
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
    
  0.464
CCQ91731.1
Two component transcriptional regulator, winged helix family.
       0.462
Your Current Organism:
Nitrospina gracilis
NCBI taxonomy Id: 1266370
Other names: N. gracilis 3/211, Nitrospina gracilis 3/211, Nitrospina gracilis str. 3/211, Nitrospina gracilis strain 3/211
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.