STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
flhBPutative Regulatory protein, FmdB family (fragment). (318 aa)    
Predicted Functional Partners:
hldE
Bifunctional protein hldE (Includes: D-beta-D-heptose 7-phosphate kinase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
  
  
  0.790
rfaEb
D-beta-D-heptose 1-phosphate adenosyltransferase; Function of strongly homologous gene; enzyme.
  
  
  0.780
CCQ91486.1
Putative Heptosyltransferase family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.773
CCQ89723.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
  0.687
CCQ90344.1
Putative Lipopolysaccharide heptosyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
0.628
CCQ92005.1
Putative Lipid A biosynthesis acyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.612
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
  
 0.610
CCQ89867.1
Exported hypothetical protein; No homology to any previously reported sequences.
  
 
 0.581
CCQ90543.1
Hypothetical protein; No homology to any previously reported sequences.
  
 
 0.581
CCQ91643.1
Hypothetical protein; No homology to any previously reported sequences.
  
 
 0.581
Your Current Organism:
Nitrospina gracilis
NCBI taxonomy Id: 1266370
Other names: N. gracilis 3/211, Nitrospina gracilis 3/211, Nitrospina gracilis str. 3/211, Nitrospina gracilis strain 3/211
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.