Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ORV43625.1CopY family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)    
Predicted Functional Partners:
AWC01_05275
DUF305 domain-containing protein; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.954
ORV40164.1
Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.804
ORV43517.1
Peptidase M56; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.784
ORV43674.1
Peptidase M48, Ste24p; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.777
ORV35648.1
Zn-dependent protease with chaperone function; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.763
AWC01_05430
Alpha/beta hydrolase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.613
ORV43626.1
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.416
Your Current Organism:
Mycolicibacterium doricum
NCBI taxonomy Id: 126673
Other names: CCUG 46352, CIP 106867, DSM 44339, JCM 12405, M. doricum, Mycobacterium doricum, Mycobacterium doricum Tortoli et al. 2001, Mycolicibacterium doricum (Tortoli et al., 2001) Gupta et al. 2018, strain FI-13295
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