STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rocFArginase; Belongs to the arginase family. (299 aa)    
Predicted Functional Partners:
odcI
Ornithine decarboxylase%2C inducible.
  
 
 0.949
speA
Arginine decarboxylase.
 
 
 0.949
pdxK
Pyridoxine kinase; Belongs to the pyridoxine kinase family.
   
 
  0.929
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.
  
 
 0.895
gdhA
NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.865
glnA_1
Glutamine synthetase.
     
 0.838
asnO
Asparagine synthetase [glutamine-hydrolyzing] 3.
     
 0.828
prmC
Release factor glutamine methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
  
    0.811
calB
Coniferyl aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.750
gapN
NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.705
Your Current Organism:
Clostridium ventriculi
NCBI taxonomy Id: 1267
Other names: ATCC 19633, ATCC 29068, BCRC 15563, C. ventriculi, CCRC 15563, CCRC:15563, DSM 286, NCTC 12966, Sarcina ventriculi, Zymosarcina ventriculi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.