STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJA44041.1DNA repair protein radc; Belongs to the UPF0758 family. (215 aa)    
Predicted Functional Partners:
AJA44556.1
MAF protein; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
  
  
 0.674
AJA46084.1
Putative amidophosphoribosyltransferase.
 
    0.652
AJA46064.1
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
  
  
 0.641
AJA46131.1
DNA protecting protein DprA.
  
  
 0.481
mutS
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
 
   
 0.479
AJA44606.1
DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.471
AJA44042.1
FKBP-type peptidyl prolyl cis-trans isomerase/Apo-metallochaperone SlyD.
       0.469
slyX
Hypothetical protein; Belongs to the SlyX family.
       0.432
mutL
DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
 
   
 0.414
Your Current Organism:
Frischella perrara
NCBI taxonomy Id: 1267021
Other names: ATCC BAA-2450, F. perrara, Frischella perrara Engel et al. 2013, NCIMB 14821, gamma proteobacterium PEB0191, strain PEB0191
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