STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEV83244.1Small conductance mechanosensitive channel. (272 aa)    
Predicted Functional Partners:
SEV83261.1
Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase.
       0.686
SEV83272.1
Transcriptional regulator, AsnC family.
       0.681
panB
Ketopantoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
       0.512
SEV83282.1
Hypothetical protein.
       0.495
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
    0.489
SEV99719.1
cation:H+ antiporter.
 
    0.456
Your Current Organism:
Fabibacter pacificus
NCBI taxonomy Id: 1267423
Other names: CGMCC 1.12402, F. pacificus, Fabibacter pacificus Huo et al. 2013, Fabibacter sp. DY53, JCM 18885, strain DY53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.