Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CR3_0096 | CR3_0097 | CR3_0096 | CR3_0097 | Hypothetical protein. | Hypothetical protein. | 0.664 |
CR3_0096 | CR3_0098 | CR3_0096 | CR3_0098 | Hypothetical protein. | Fe-S oxidoreductase. | 0.475 |
CR3_0096 | ebsC | CR3_0096 | CR3_0094 | Hypothetical protein. | Putative transcription regulator. | 0.474 |
CR3_0096 | flK | CR3_0096 | CR3_0095 | Hypothetical protein. | Thioesterase. | 0.474 |
CR3_0096 | gloB | CR3_0096 | CR3_0099 | Hypothetical protein. | Zn-dependent hydrolase, including glyoxylase. | 0.402 |
CR3_0096 | rimL | CR3_0096 | CR3_0100 | Hypothetical protein. | Acetyltransferase, including N-acetylase of ribosomal proteins. | 0.402 |
CR3_0097 | CR3_0096 | CR3_0097 | CR3_0096 | Hypothetical protein. | Hypothetical protein. | 0.664 |
CR3_0097 | CR3_0098 | CR3_0097 | CR3_0098 | Hypothetical protein. | Fe-S oxidoreductase. | 0.545 |
CR3_0097 | ebsC | CR3_0097 | CR3_0094 | Hypothetical protein. | Putative transcription regulator. | 0.416 |
CR3_0097 | flK | CR3_0097 | CR3_0095 | Hypothetical protein. | Thioesterase. | 0.416 |
CR3_0097 | gloB | CR3_0097 | CR3_0099 | Hypothetical protein. | Zn-dependent hydrolase, including glyoxylase. | 0.457 |
CR3_0097 | rimL | CR3_0097 | CR3_0100 | Hypothetical protein. | Acetyltransferase, including N-acetylase of ribosomal proteins. | 0.457 |
CR3_0098 | CR3_0096 | CR3_0098 | CR3_0096 | Fe-S oxidoreductase. | Hypothetical protein. | 0.475 |
CR3_0098 | CR3_0097 | CR3_0098 | CR3_0097 | Fe-S oxidoreductase. | Hypothetical protein. | 0.545 |
CR3_0098 | gloB | CR3_0098 | CR3_0099 | Fe-S oxidoreductase. | Zn-dependent hydrolase, including glyoxylase. | 0.756 |
CR3_0098 | rimL | CR3_0098 | CR3_0100 | Fe-S oxidoreductase. | Acetyltransferase, including N-acetylase of ribosomal proteins. | 0.648 |
ebsC | CR3_0096 | CR3_0094 | CR3_0096 | Putative transcription regulator. | Hypothetical protein. | 0.474 |
ebsC | CR3_0097 | CR3_0094 | CR3_0097 | Putative transcription regulator. | Hypothetical protein. | 0.416 |
ebsC | flK | CR3_0094 | CR3_0095 | Putative transcription regulator. | Thioesterase. | 0.784 |
ebsC | rimL | CR3_0094 | CR3_0100 | Putative transcription regulator. | Acetyltransferase, including N-acetylase of ribosomal proteins. | 0.454 |
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