STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rexBATP-dependent helicase/deoxyribonuclease subunit B. (983 aa)    
Predicted Functional Partners:
addA
ATP-dependent helicase/nuclease subunit A; Belongs to the helicase family. UvrD subfamily.
 
   
 0.962
divL
Sensor protein DivL.
 
     0.870
spsI
Bifunctional IPC transferase and DIPP synthase.
       0.817
WYH_00707
Phosphotransferase enzyme family protein.
       0.817
tsaE
tRNA threonylcarbamoyladenosine biosynthesis protein TsaE.
       0.817
lolA
Outer-membrane lipoprotein carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
     0.787
WYH_03059
Stringent starvation protein B.
  
     0.746
WYH_01168
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.738
ftsQ
Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
     0.730
WYH_01336
Hypothetical protein.
  
     0.715
Your Current Organism:
Altererythrobacter atlanticus
NCBI taxonomy Id: 1267766
Other names: A. atlanticus, Altererythrobacter atlanticus Wu et al. 2014, Altererythrobacter sp. 26DY36, CGMCC 1.12411, JCM 18865, strain 26DY36
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