STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betA_3Oxygen-dependent choline dehydrogenase. (541 aa)    
Predicted Functional Partners:
WYH_00781
Putative phospholipase A1 precursor; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family.
     
  0.800
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
     
  0.800
plcN
Non-hemolytic phospholipase C precursor.
     
  0.800
betA_2
Oxygen-dependent choline dehydrogenase.
 
    
0.788
WYH_02652
SnoaL-like domain protein.
       0.773
puuC_1
Aldehyde dehydrogenase PuuC; Belongs to the aldehyde dehydrogenase family.
  
  
 0.558
trxB
Thioredoxin reductase.
       0.544
WYH_02947
Ankyrin repeats (3 copies).
    
 0.414
Your Current Organism:
Altererythrobacter atlanticus
NCBI taxonomy Id: 1267766
Other names: A. atlanticus, Altererythrobacter atlanticus Wu et al. 2014, Altererythrobacter sp. 26DY36, CGMCC 1.12411, JCM 18865, strain 26DY36
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