STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ligB_3Protocatechuate 4,5-dioxygenase beta chain. (292 aa)    
Predicted Functional Partners:
ligA_4
Protocatechuate 4,5-dioxygenase alpha chain.
 
 0.997
ligA_3
Protocatechuate 4,5-dioxygenase alpha chain.
 
 0.988
ligA_2
Protocatechuate 4,5-dioxygenase alpha chain.
 
  
 0.977
ligI
2-pyrone-4,6-dicarbaxylate hydrolase.
 
  
 0.977
ligC
4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase.
 
  
 0.977
pobA_1
P-hydroxybenzoate hydroxylase.
 
  
 0.929
gcvT_1
Aminomethyltransferase; Belongs to the GcvT family.
  
  
  0.913
gcvT_3
Aminomethyltransferase; Belongs to the GcvT family.
  
  
  0.913
ligB_1
Protocatechuate 4,5-dioxygenase beta chain.
  
  
 
0.906
ligB_2
Protocatechuate 4,5-dioxygenase beta chain.
  
  
 
0.901
Your Current Organism:
Altererythrobacter atlanticus
NCBI taxonomy Id: 1267766
Other names: A. atlanticus, Altererythrobacter atlanticus Wu et al. 2014, Altererythrobacter sp. 26DY36, CGMCC 1.12411, JCM 18865, strain 26DY36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.