STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BV394_00885DUF1638 domain-containing protein. (213 aa)    
Predicted Functional Partners:
BV394_00890
5-methyltetrahydrofolate--homocysteine methyltransferase.
 
     0.926
BV394_01210
Drug:proton antiporter.
 
   
 0.874
BV394_00895
5-methyltetrahydrofolate--homocysteine methyltransferase.
 
     0.824
BV394_01235
CvfA/B/C family virulence factor.
 
     0.811
BV394_01805
Methyltransferase; Belongs to the trimethylamine methyltransferase family.
 
     0.811
BV394_01225
5-methyltetrahydrofolate--homocysteine methyltransferase.
 
     0.808
BV394_01230
Methylenetetrahydrofolate reductase (NADPH).
 
     0.706
BV394_00955
Uncharacterized protein.
  
     0.668
BV394_03690
Transcriptional regulator.
  
     0.654
BV394_10920
4Fe-4S ferredoxin-type domain-containing protein.
  
     0.454
Your Current Organism:
Brevirhabdus pacifica
NCBI taxonomy Id: 1267768
Other names: B. pacifica, Brevirhabdus pacifica Wu et al. 2015 emend. Liu et al. 2017, CGMCC 1.12416, DSM 27767, JCM 19489, KCTC 42421 [[Xuhuaishuia manganoxidans]], Loktanella sp. 22DY15, MCCC 1K00276, MCCC 1K00502 [[Xuhuaishuia manganoxidans]], Roseovarius sp. DY6-4, Xuhuaishuia manganoxidans, Xuhuaishuia manganoxidans Wang et al. 2016, strain 22DY15, strain DY6-4 [[Xuhuaishuia manganoxidans]]
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