STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BV394_03045Malonyl-CoA decarboxylase. (424 aa)    
Predicted Functional Partners:
BV394_03055
TRAP-type C4-dicarboxylate transport system permease small subunit.
 
  0.972
BV394_03040
Malonyl-CoA/methylmalonyl-CoA synthetase.
  
 0.967
BV394_12685
Malonyl-CoA/methylmalonyl-CoA synthetase.
  
 0.859
BV394_00300
Malonyl CoA-acyl carrier protein transacylase.
  
 
  0.847
BV394_03050
Tripartite ATP-independent transporter DctM subunit.
 
     0.845
BV394_03060
TRAP-type C4-dicarboxylate transport system substrate-binding protein.
 
    0.818
acsA
Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
     
  0.660
prpE
Propionyl-CoA synthetase.
 
   
  0.660
BV394_13430
AMP-dependent synthetase.
 
   
  0.660
BV394_05045
C4-dicarboxylate ABC transporter substrate-binding protein.
 
  0.632
Your Current Organism:
Brevirhabdus pacifica
NCBI taxonomy Id: 1267768
Other names: B. pacifica, Brevirhabdus pacifica Wu et al. 2015 emend. Liu et al. 2017, CGMCC 1.12416, DSM 27767, JCM 19489, KCTC 42421 [[Xuhuaishuia manganoxidans]], Loktanella sp. 22DY15, MCCC 1K00276, MCCC 1K00502 [[Xuhuaishuia manganoxidans]], Roseovarius sp. DY6-4, Xuhuaishuia manganoxidans, Xuhuaishuia manganoxidans Wang et al. 2016, strain 22DY15, strain DY6-4 [[Xuhuaishuia manganoxidans]]
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