STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BV394_03170Branched-chain amino acid transport system ATP-binding protein. (252 aa)    
Predicted Functional Partners:
BV394_03165
Amino acid/amide ABC transporter membrane protein 2 (HAAT family); Belongs to the binding-protein-dependent transport system permease family.
 
 0.996
BV394_03175
Amino acid/amide ABC transporter ATP-binding protein 2 (HAAT family).
 
0.994
BV394_03160
Amino acid/amide ABC transporter membrane protein 1 (HAAT family); Belongs to the binding-protein-dependent transport system permease family.
 
 0.986
BV394_08040
Amino acid/amide ABC transporter membrane protein 2 (HAAT family); Belongs to the binding-protein-dependent transport system permease family.
 
 0.986
BV394_07865
Amino acid/amide ABC transporter membrane protein 2 (HAAT family); Belongs to the binding-protein-dependent transport system permease family.
 
 0.985
BV394_03155
Amino acid/amide ABC transporter substrate-binding protein (HAAT family).
 
 
 0.977
BV394_07870
Amino acid/amide ABC transporter membrane protein 1 (HAAT family); Belongs to the binding-protein-dependent transport system permease family.
 
 0.925
BV394_01825
Amino acid/amide ABC transporter membrane protein 1 (HAAT family); Belongs to the binding-protein-dependent transport system permease family.
 
 0.924
BV394_01830
Amino acid/amide ABC transporter membrane protein 2 (HAAT family); Belongs to the binding-protein-dependent transport system permease family.
 
 0.903
BV394_01810
Amino acid/amide ABC transporter substrate-binding protein (HAAT family).
 
 
 0.895
Your Current Organism:
Brevirhabdus pacifica
NCBI taxonomy Id: 1267768
Other names: B. pacifica, Brevirhabdus pacifica Wu et al. 2015 emend. Liu et al. 2017, CGMCC 1.12416, DSM 27767, JCM 19489, KCTC 42421 [[Xuhuaishuia manganoxidans]], Loktanella sp. 22DY15, MCCC 1K00276, MCCC 1K00502 [[Xuhuaishuia manganoxidans]], Roseovarius sp. DY6-4, Xuhuaishuia manganoxidans, Xuhuaishuia manganoxidans Wang et al. 2016, strain 22DY15, strain DY6-4 [[Xuhuaishuia manganoxidans]]
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