STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BV394_04710Sugar ABC transporter permease. (285 aa)    
Predicted Functional Partners:
BV394_04700
ABC transporter substrate-binding protein.
 
 0.995
BV394_04720
Carbohydrate ABC transporter ATP-binding protein (CUT1 family); Belongs to the ABC transporter superfamily.
 0.969
BV394_04725
Carbohydrate ABC transporter ATP-binding protein (CUT1 family).
 0.969
BV394_09500
Sorbitol ABC transporter membrane protein /mannitol ABC transporter membrane protein.
 0.960
BV394_04705
Putative small integral membrane protein.
 
    0.952
BV394_09505
Sorbitol-binding protein /mannitol-binding protein.
  
 0.948
BV394_04450
Carbohydrate ABC transporter membrane protein 1 (CUT1 family).
 0.942
BV394_00570
Alpha-glucoside ABC transporter permease.
 
 0.936
BV394_04460
Carbohydrate ABC transporter ATP-binding protein (CUT1 family); Belongs to the ABC transporter superfamily.
 0.908
BV394_00585
ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 0.906
Your Current Organism:
Brevirhabdus pacifica
NCBI taxonomy Id: 1267768
Other names: B. pacifica, Brevirhabdus pacifica Wu et al. 2015 emend. Liu et al. 2017, CGMCC 1.12416, DSM 27767, JCM 19489, KCTC 42421 [[Xuhuaishuia manganoxidans]], Loktanella sp. 22DY15, MCCC 1K00276, MCCC 1K00502 [[Xuhuaishuia manganoxidans]], Roseovarius sp. DY6-4, Xuhuaishuia manganoxidans, Xuhuaishuia manganoxidans Wang et al. 2016, strain 22DY15, strain DY6-4 [[Xuhuaishuia manganoxidans]]
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