STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BV394_05645Uncharacterized protein DUF2219. (301 aa)    
Predicted Functional Partners:
BV394_05640
Hemolysin-type calcium-binding protein.
 
    0.861
BV394_12515
Uncharacterized protein.
  
     0.741
BV394_00975
Uncharacterized protein.
  
     0.701
BV394_10140
Uncharacterized protein.
  
     0.610
BV394_12510
Cell envelope biogenesis protein OmpA.
  
     0.596
BV394_05945
PG_binding_1 domain-containing protein.
  
     0.586
BV394_13630
Endonuclease/exonuclease/phosphatase family protein.
  
     0.565
BV394_10135
Uncharacterized protein.
  
     0.554
BV394_00900
Hint_2 domain-containing protein.
  
     0.493
BV394_08595
OmpR/PhoB-type domain-containing protein.
  
    0.469
Your Current Organism:
Brevirhabdus pacifica
NCBI taxonomy Id: 1267768
Other names: B. pacifica, Brevirhabdus pacifica Wu et al. 2015 emend. Liu et al. 2017, CGMCC 1.12416, DSM 27767, JCM 19489, KCTC 42421 [[Xuhuaishuia manganoxidans]], Loktanella sp. 22DY15, MCCC 1K00276, MCCC 1K00502 [[Xuhuaishuia manganoxidans]], Roseovarius sp. DY6-4, Xuhuaishuia manganoxidans, Xuhuaishuia manganoxidans Wang et al. 2016, strain 22DY15, strain DY6-4 [[Xuhuaishuia manganoxidans]]
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