STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BV394_05910Alkane 1-monooxygenase. (355 aa)    
Predicted Functional Partners:
BV394_06810
Phthalate 4,5-dioxygenase reductase subunit.
  
 
 0.826
BV394_14765
Phthalate 4,5-dioxygenase reductase subunit.
  
 
 0.826
BV394_02690
Cytochrome P450.
 
  
 0.796
BV394_06910
Toluene monooxygenase electron transfer component.
 
 
 0.770
BV394_02695
Uncharacterized protein.
  
     0.724
BV394_10060
S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
     
 0.696
fadH
NADPH-dependent 2,4-dienoyl-CoA reductase.
 
   
 0.657
BV394_03105
Uncharacterized protein.
  
     0.613
BV394_05185
Sterol desaturase/sphingolipid hydroxylase (Fatty acid hydroxylase superfamily).
  
 
 0.589
BV394_03295
Capsular polysaccharide export protein.
  
     0.574
Your Current Organism:
Brevirhabdus pacifica
NCBI taxonomy Id: 1267768
Other names: B. pacifica, Brevirhabdus pacifica Wu et al. 2015 emend. Liu et al. 2017, CGMCC 1.12416, DSM 27767, JCM 19489, KCTC 42421 [[Xuhuaishuia manganoxidans]], Loktanella sp. 22DY15, MCCC 1K00276, MCCC 1K00502 [[Xuhuaishuia manganoxidans]], Roseovarius sp. DY6-4, Xuhuaishuia manganoxidans, Xuhuaishuia manganoxidans Wang et al. 2016, strain 22DY15, strain DY6-4 [[Xuhuaishuia manganoxidans]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.