Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BV394_07940 | rph | BV394_07940 | BV394_08995 | Uncharacterized protein. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.928 |
BV394_08990 | rph | BV394_08990 | BV394_08995 | dITP/XTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.996 |
BV394_09300 | BV394_12050 | BV394_09300 | BV394_12050 | Ribonuclease D. | DEAD/DEAH box helicase. | 0.992 |
BV394_09300 | BV394_12315 | BV394_09300 | BV394_12315 | Ribonuclease D. | ATP-dependent helicase HrpB. | 0.968 |
BV394_09300 | BV394_12560 | BV394_09300 | BV394_12560 | Ribonuclease D. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.973 |
BV394_09300 | rnr | BV394_09300 | BV394_09520 | Ribonuclease D. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.952 |
BV394_09300 | rph | BV394_09300 | BV394_08995 | Ribonuclease D. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.992 |
BV394_09300 | rpsD | BV394_09300 | BV394_05635 | Ribonuclease D. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.987 |
BV394_12050 | BV394_09300 | BV394_12050 | BV394_09300 | DEAD/DEAH box helicase. | Ribonuclease D. | 0.992 |
BV394_12050 | BV394_12315 | BV394_12050 | BV394_12315 | DEAD/DEAH box helicase. | ATP-dependent helicase HrpB. | 0.922 |
BV394_12050 | BV394_12560 | BV394_12050 | BV394_12560 | DEAD/DEAH box helicase. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.942 |
BV394_12050 | rnd | BV394_12050 | BV394_00870 | DEAD/DEAH box helicase. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.992 |
BV394_12050 | rnr | BV394_12050 | BV394_09520 | DEAD/DEAH box helicase. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.993 |
BV394_12050 | rph | BV394_12050 | BV394_08995 | DEAD/DEAH box helicase. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.993 |
BV394_12050 | rpsD | BV394_12050 | BV394_05635 | DEAD/DEAH box helicase. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.991 |
BV394_12315 | BV394_09300 | BV394_12315 | BV394_09300 | ATP-dependent helicase HrpB. | Ribonuclease D. | 0.968 |
BV394_12315 | BV394_12050 | BV394_12315 | BV394_12050 | ATP-dependent helicase HrpB. | DEAD/DEAH box helicase. | 0.922 |
BV394_12315 | BV394_12560 | BV394_12315 | BV394_12560 | ATP-dependent helicase HrpB. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.976 |
BV394_12315 | rnd | BV394_12315 | BV394_00870 | ATP-dependent helicase HrpB. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.974 |
BV394_12315 | rnr | BV394_12315 | BV394_09520 | ATP-dependent helicase HrpB. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.426 |
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