STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BV394_096704-aminobutyrate aminotransferase-like enzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (416 aa)    
Predicted Functional Partners:
BV394_09675
APH domain-containing protein.
  
  0.975
BV394_09360
Glutamate synthase (NADPH) large subunit.
     
 0.907
BV394_00445
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
 0.804
BV394_05180
4-methylaminobutanoate oxidase (Formaldehyde-forming); Belongs to the GcvT family.
  
 
 0.803
BV394_11985
Dimethylglycine dehydrogenase; Belongs to the GcvT family.
  
 
 0.803
BV394_08320
Aldehyde dehydrogenase family protein.
 
 0.801
BV394_14355
Agmatinase; Belongs to the arginase family.
 
 
 0.793
BV394_14155
Methylmalonate-semialdehyde dehydrogenase (CoA acylating).
 
 0.791
BV394_09665
Ribosome-associated protein.
       0.778
amiE
Aliphatic amidase; Also exhibits in vitro acyl transferase activity, transferring the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates.
  
 
 0.744
Your Current Organism:
Brevirhabdus pacifica
NCBI taxonomy Id: 1267768
Other names: B. pacifica, Brevirhabdus pacifica Wu et al. 2015 emend. Liu et al. 2017, CGMCC 1.12416, DSM 27767, JCM 19489, KCTC 42421 [[Xuhuaishuia manganoxidans]], Loktanella sp. 22DY15, MCCC 1K00276, MCCC 1K00502 [[Xuhuaishuia manganoxidans]], Roseovarius sp. DY6-4, Xuhuaishuia manganoxidans, Xuhuaishuia manganoxidans Wang et al. 2016, strain 22DY15, strain DY6-4 [[Xuhuaishuia manganoxidans]]
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