STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BV394_11420Tripartite ATP-independent transporter DctM subunit. (454 aa)    
Predicted Functional Partners:
BV394_11410
TRAP-type mannitol/chloroaromatic compound transport system substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
 
  0.987
BV394_11415
TRAP-type mannitol/chloroaromatic compound transport system permease small subunit.
    0.956
BV394_04760
TRAP-type mannitol/chloroaromatic compound transport system permease small subunit.
    0.880
BV394_11425
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase A subunit family amidase.
 
     0.805
BV394_04755
TRAP-type mannitol/chloroaromatic compound transport system substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.778
BV394_02720
ABC transporter substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.746
BV394_00825
Tripartite ATP-independent transporter DctP family solute receptor.
     0.676
BV394_11435
Lactate dehydrogenase-like 2-hydroxyacid dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
    0.550
BV394_11430
Uncharacterized protein.
       0.541
BV394_05050
Tripartite ATP-independent transporter DctP family solute receptor.
     0.532
Your Current Organism:
Brevirhabdus pacifica
NCBI taxonomy Id: 1267768
Other names: B. pacifica, Brevirhabdus pacifica Wu et al. 2015 emend. Liu et al. 2017, CGMCC 1.12416, DSM 27767, JCM 19489, KCTC 42421 [[Xuhuaishuia manganoxidans]], Loktanella sp. 22DY15, MCCC 1K00276, MCCC 1K00502 [[Xuhuaishuia manganoxidans]], Roseovarius sp. DY6-4, Xuhuaishuia manganoxidans, Xuhuaishuia manganoxidans Wang et al. 2016, strain 22DY15, strain DY6-4 [[Xuhuaishuia manganoxidans]]
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