STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BV394_14550IclR family transcriptional regulator. (272 aa)    
Predicted Functional Partners:
BV394_06120
IclR family transcriptional regulator.
  
     0.760
BV394_14555
Phenylacetic acid degradation protein.
 
     0.713
BV394_12765
AHS1 domain-containing protein.
  
    0.609
BV394_14585
TRAP transporter TAXI family solute receptor.
  
     0.572
BV394_14520
Acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
  0.561
BV394_12770
Allophanate hydrolase.
  
    0.553
BV394_14535
Broad specificity phosphatase PhoE.
 
     0.547
BV394_14545
NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family).
  
    0.533
BV394_14565
Alkylation response protein AidB-like acyl-CoA dehydrogenase.
  
  
  0.527
BV394_14540
Phosphotransferase family protein.
  
    0.526
Your Current Organism:
Brevirhabdus pacifica
NCBI taxonomy Id: 1267768
Other names: B. pacifica, Brevirhabdus pacifica Wu et al. 2015 emend. Liu et al. 2017, CGMCC 1.12416, DSM 27767, JCM 19489, KCTC 42421 [[Xuhuaishuia manganoxidans]], Loktanella sp. 22DY15, MCCC 1K00276, MCCC 1K00502 [[Xuhuaishuia manganoxidans]], Roseovarius sp. DY6-4, Xuhuaishuia manganoxidans, Xuhuaishuia manganoxidans Wang et al. 2016, strain 22DY15, strain DY6-4 [[Xuhuaishuia manganoxidans]]
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