AHV95036.1 protein (Paenibacillus sabinae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AHV95036.1

Nlp/p60 family protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins). (160 aa)

Predicted Functional Partners:

AHV95038.1

0.531

AHV95037.1

0.474

Your Current Organism:

Paenibacillus sabinae

NCBI taxonomy Id: 1268072
Other names: P. sabinae T27, Paenibacillus sabinae T27

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHV95036.1	AHV95037.1	PSAB_00460	PSAB_00465	Nlp/p60 family protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).	Hypothetical protein.	0.474
AHV95036.1	AHV95038.1	PSAB_00460	PSAB_00470	Nlp/p60 family protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).	Peptidase m1 membrane alanine aminopeptidase; COG0308 Aminopeptidase N.	0.531
AHV95037.1	AHV95036.1	PSAB_00465	PSAB_00460	Hypothetical protein.	Nlp/p60 family protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).	0.474
AHV95037.1	AHV95038.1	PSAB_00465	PSAB_00470	Hypothetical protein.	Peptidase m1 membrane alanine aminopeptidase; COG0308 Aminopeptidase N.	0.838
AHV95038.1	AHV95036.1	PSAB_00470	PSAB_00460	Peptidase m1 membrane alanine aminopeptidase; COG0308 Aminopeptidase N.	Nlp/p60 family protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).	0.531
AHV95038.1	AHV95037.1	PSAB_00470	PSAB_00465	Peptidase m1 membrane alanine aminopeptidase; COG0308 Aminopeptidase N.	Hypothetical protein.	0.838