STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lvhB3Type IV secretory pathway, VirB3 component. (93 aa)    
Predicted Functional Partners:
lvhB4
Type IV secretion/conjugal transfer ATPase, VirB4 family.
  
 
 0.986
lvhB8
Type IV secretory pathway, component VirB8.
  
 
 0.968
lvhB9
P-type conjugative transfer protein VirB9.
  
  
 0.945
lvhB10
Type IV secretory pathway, VirB10 component.
  
  
 0.945
lvhB6
Type IV secretory pathway, VirB6 component.
  
  
 0.944
icmB
Dot/Icm secretion system protein ImcB.
  
 
 0.870
lvhB5
Type IV secretion system.
     
 0.827
lvhD4
Type IV secretory pathway, VirD4 component.
     
 0.825
lvhB2
Type IV secretory pathway, VirB2 component.
       0.787
lvrC
Carbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s).
       0.786
Your Current Organism:
Legionella oakridgensis
NCBI taxonomy Id: 1268635
Other names: L. oakridgensis ATCC 33761 = DSM 21215, Legionella oakridgensis ATCC 33761, Legionella oakridgensis ATCC 33761 = DSM 21215, Legionella oakridgensis DSM 21215, Legionella oakridgensis DSM 21215 = ATCC 33761, Legionella oakridgensis OR-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.